SBGrid Consortium homepage

Identify and find telomeres, or telomeric repeats in a genome.

LongReadSum supports FASTA, FASTQ, BAM, FAST5, and sequencing_summary.txt file formats for quick generation of QC data in HTML and text format.

Lazy Predict helps build a lot of basic models without much code and helps understand which models works better without any parameter tuning.

Local reconstruction of variation graphs using partial order alignment. Pangenome graphs built from raw sets of alignments may have complex local structures generated by common patterns of genome variation. smoothxg can be used to extract the consensus pangenome graph by applying the heaviest bundle algorithm to each chain.

is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.

Robust comparative analysis and contamination removal for metagenomics

Ultraperformant Chip-Seq broad domain finder based on SICER.

Metagenome assembler for Hifi reads, based on hifiasm.

panacus is a counting tool for pangenome graphs. It supports GFA files with P and W lines, but requires that the graph is blunt, i.e., nodes do not overlap and consequently, each link (L) points from the end of one segment (S) to the start of another.

Genesis Applications for Phylogenetic Placement Analysis